Since Beginning of 2018 the following papers were generated with the help of C2f.

Congratulations to all the authors!

If you plan to publish a paper, it would be very helpful if you mention us in the acknowledgments.

2025

Hermanns, T., Kolek, S., Uthoff, M., de Heiden, R. A., Mulder, M. P. C., Baumann, U., and Hofmann, K. (2025) A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode. Mol Cell. 10.1016/j.molcel.2025.02.002

2024

Atomwise AIMS Program (2024) AI is a viable alternative to high throughput screening: a 318-target study. Sci Rep. 14, 7526
Kremer, M., Schulze, S., Eisenbruch, N., Nagel, F., Vogt, R., Berndt, L., Dörre, B., Palm, G. J., Hoppen, J., Girbardt, B., Albrecht, D., Sievers, S., Delcea, M., Baumann, U., Schnetz, K., and Lammers, M. (2024) Bacteria employ lysine acetylation of transcriptional regulators to adapt gene expression to cellular metabolism. Nat Commun. 15, 1674
Hermanns, T., Uthoff, M., Baumann, U., and Hofmann, K. (2024) The structural basis for deubiquitination by the fingerless USP-type effector TssM. Life Sci Alliance. 7, e202302422

Hermanns, T., Uthoff, M., Baumann, U., and Hofmann, K. (2024) The structural basis for deubiquitination by the fingerless USP-type effector TssM. Life Science Alliance. 10.26508/lsa.202302422
Boll, V., Hermanns, T., Uthoff, M., Erven, I., Hörner, E.-M., Kozjak-Pavlovic, V., Baumann, U., & Hofmann, K. (2023). Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nature Communications, 14(1), 7335. https://doi.org/10.1038/s41467-023-43144-y
Cao, Y., Kümmel, F., Logemann, E., Gebauer, J. M., Lawson, A. W., Yu, D., Uthoff, M., Keller, B., Jirschitzka, J., Baumann, U., Tsuda, K., Chai, J., and Schulze-Lefert, P. (2023) Structural polymorphisms within a common powdery mildew effector scaffold as a driver of coevolution with cereal immune receptors. Proceedings of the National Academy of Sciences. 120, e2307604120

Jia, A., Huang, S., Song, W., Wang, J., Meng, Y., Sun, Y., Xu, L., Laessle, H., Jirschitzka, J., Hou, J., Zhang, T., Yu, W., Hessler, G., Li, E., Ma, S., Yu, D., Gebauer, J., Baumann, U., Liu, X., Han, Z., Chang, J., Parker, J. E., and Chai, J. (2022) TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science. 377, eabq8180
Erven, I., Abraham, E., Hermanns, T., Baumann, U., & Hofmann, K. (2022). A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins. Nature Communications, 13(1), 7643. https://doi.org/10.1038/s41467-022-35244-y

Abraham, E. T., Oecal, S., Mörgelin, M., Schmid, P. W. N., Buchner, J., Baumann, U., and Gebauer, J. M. (2021) Collagen’s primary structure determines collagen:HSP47 complex stoichiometry. Journal of Biological Chemistry. 10.1016/j.jbc.2021.101169

Maaßen, A., Gebauer, J. M., Theres Abraham, E., Grimm, I., Neudörfl, J.-M., Kühne, R., Neundorf, I., Baumann, U., and Schmalz, H.-G. (2020) Triple-Helix-Stabilizing Effects in Collagen Model Peptides Containing PPII-Helix-Preorganized Diproline Modules. Angew. Chem. Int. Ed. Engl. 10.1002/anie.201914101
Solomon-Degefa, H., Gebauer, J. M., Jeffries, C. M., Freiburg, C. D., Meckelburg, P., Bird, L. E., Baumann, U., Svergun, D. I., Owens, R. J., Werner, J. M., Behrmann, E., Paulsson, M., and Wagener, R. (2020) Structure of a collagen VI α3 chain VWA domain array: adaptability and functional implications of myopathy causing mutations. Journal of Biological Chemistry. 295, 12755–12771

Pichlo, C., Juetten, L., Wojtalla, F., Schacherl, M., Diaz, D., and Baumann, U. (2019) Molecular determinants of the mechanism and substrate specificity of Clostridium difficile proline-proline endopeptidase-1. J. Biol. Chem. 10.1074/jbc.RA119.009029

Gebauer, J. M., Köhler, A., Dietmar, H., Gompert, M., Neundorf, I., Zaucke, F., Koch, M., and Baumann, U. (2018) COMP and TSP-4 interact specifically with the novel GXKGHR motif only found in fibrillar collagens. Sci Rep. 8, 17187
Pichlo, C., Toelzer, C., Chojnacki, K., Öcal, S., Uthoff, M., Ruegenberg, S., Hermanns, T., Schacherl, M., Denzel, M. S., Hofmann, K., Niefind, K., and Baumann, U. (2018) Improved protein-crystal identification by using 2,2,2-trichloroethanol as a fluorescence enhancer. Acta Cryst F (2018) in press
Uthoff, M., and Baumann, U. (2018) Conformational flexibility of pore loop-1 gives insights into substrate translocation by the AAA+ protease FtsH. Journal of Structural Biology. 10.1016/j.jsb.2018.08.009